Publications
Detection of a historic reservoir of bedaquiline/clofazimine resistance-associated variants in Mycobacterium tuberculosis
Genome Medicine
Camus Nimmo, Arturo Torres Ortiz, Cedric C S Tan, Juanita Pang, Mislav Acman, James Millard, Nesri Padayatchi, Alison D Grant, Max O'Donnell, Alex Pym, Ola B Brynildsrud, Vegard Eldholm, Louis Grandjean, Xavier Didelot, Fran\ccois Balloux, Lucy van Dorp
Increase in antioxidant capacity associated with the successful subclone of hypervirulent carbapenem-resistant Klebsiella pneumoniae ST11-KL64
Nature Communications
Ruobing Wang, Anru Zhang, Shijun Sun, Guankun Yin, Xingyu Wu, Qi Ding, Qi Wang, Fengning Chen, Shuyi Wang, Lucy van Dorp, Yawei Zhang, Longyang Jin, Xiaojuan Wang, Francois Balloux, Hui Wang
Genomic screening of 16 UK native bat species through conservationist networks uncovers coronaviruses with zoonotic potential
Nature Communications 2023 14:1
Cedric C S Tan, Jahcub Trew, Thomas P Peacock, Kai Yi Mok, Charlie Hart, Kelvin Lau, Dongchun Ni, C David, L Orme, Emma Ransome, William D Pearse, Christopher M Coleman, Dalan Bailey, Nazia Thakur, Jessica L Quantrill, Ksenia Sukhova, Damien Richard, Laura Kahane, Guy Woodward, Thomas Bell, Lisa Worledge, Joe Nunez-Mino, Wendy Barclay, Lucy van Dorp, Francois Balloux, Vincent Savolainen
Genome Biology and Evolution
Marina Escalera-Zamudio, Sergei L Kosakovsky Pond, Natalia Viña, Bernardo Gutiérrez, Rhys P D Inward, Julien Thézé, Lucy van Dorp, Hugo G Castelán-Sánchez, Thomas A Bowden, Oliver G Pybus, Ruben J G Hulswit
Coordinated surveillance is essential to monitor and mitigate the evolutionary impacts of SARS-CoV-2 spillover and circulation in animal hosts
Nature Ecology & Evolution 2023 7:7
Suresh V. Kuchipudi, Cedric Tan, Lucy van Dorp, Maureen Lichtveld, Bradley Pickering, Jeff Bowman, Samira Mubareka, Francois Balloux
Current Biology
Shyam Gopalakrishnan, S. Sunna Ebenesersdóttir, Inge K.C. Lundstrøm, Gordon Turner-Walker, Kristjan H.S. Moore, Pierre Luisi, Ashot Margaryan, Michael D. Martin, Martin Rene Ellegaard, Ólafur Magnússon, Ásgeir Sigurðsson, Steinunn Snorradóttir, Droplaug N. Magnúsdóttir, Jason E. Laffoon, Lucy van Dorp, Xiaodong Liu, Ida Moltke, María C. Ávila-Arcos, Joshua G. Schraiber, Simon Rasmussen, David Juan, Pere Gelabert, Toni de-Dios, Anna K. Fotakis, Miren Iraeta-Orbegozo, Åshild J. Vågene, Sean Dexter Denham, Axel Christophersen, Hans K. Stenøien, Filipe G. Vieira, Shanlin Liu, Torsten Günther, Toomas Kivisild, Ole Georg Moseng, Birgitte Skar, Christina Cheung, Marcela Sandoval-Velasco, Nathan Wales, Hannes Schroeder, Paula F. Campos, Valdís B. Guðmundsdóttir, Thomas Sicheritz-Ponten, Bent Petersen, Jostein Halgunset, Edmund Gilbert, Gianpiero L. Cavalleri, Eivind Hovig, Ingrid Kockum, Tomas Olsson, Lars Alfredsson, Thomas F. Hansen, Thomas Werge, Eske Willerslev, Francois Balloux, Tomas Marques-Bonet, Carles Lalueza-Fox, Rasmus Nielsen, Kári Stefánsson, Agnar Helgason, M. Thomas P. Gilbert
Science Advances
Meriam Guellil, Lucy van Dorp, Sarah A. Inskip, Jenna M. Dittmar, Lehti Saag, Kristiina Tambets, Ruoyun Hui, Alice Rose, Eugenia D’Atanasio, Aivar Kriiska, Liivi Varul, A. M. H. C. Koekkelkoren, Rimma D. Goldina, Craig Cessford, Anu Solnik, Mait Metspalu, Johannes Krause, Alexander Herbig, John E. Robb, Charlotte J. Houldcroft, Christiana L. Scheib
Biology
Anna E. White, Toni de-Dios, Pablo Carrión, Gian Luca Bonora, Laia Llovera, Elisabetta Cilli, Esther Lizano, Maral K. Khabdulina, Daniyar T. Tleugabulov, Iñigo Olalde, Tomàs Marquès-Bonet, François Balloux, Davide Pettener, Lucy van Dorp, Donata Luiselli, Carles Lalueza-Fox
Genome Medicine
Hongbin Chen, Yuyao Yin, Lucy van Dorp, Liam P. Shaw, Hua Gao, Mislav Acman, Jizhen Yuan, Fengning Chen, Shijun Sun, Xiaojuan Wang, Shuguang Li, Yawei Zhang, Rhys A. Farrer, Hui Wang, Francois Balloux
Nature
Leo Swadling, Mariana O. Diniz, Nathalie M. Schmidt, Oliver E. Amin, Aneesh Chandran, Emily Shaw, Corinna Pade, Joseph M. Gibbons, Nina Le Bert, Anthony T. Tan, Anna Jeffery-Smith, Cedric C. S. Tan, Christine Y. L. Tham, Stephanie Kucykowicz, Gloryanne Aidoo-Micah, Joshua Rosenheim, Jessica Davies, Marina Johnson, Melanie P. Jensen, George Joy, Laura E. McCoy, Ana M. Valdes, Benjamin M. Chain, David Goldblatt, Daniel M. Altmann, Rosemary J. Boyton, Charlotte Manisty, Thomas A. Treibel, James C. Moon, Hakam Abbass, Aderonke Abiodun, Mashael Alfarih, Zoe Alldis, Mervyn Andiapen, Jessica Artico, João B. Augusto, Georgina L. Baca, Sasha N. L. Bailey, Anish N. Bhuva, Alex Boulter, Ruth Bowles, Rosemary J. Boyton, Olivia V. Bracken, Ben O'Brien, Tim Brooks, Natalie Bullock, David K. Butler, Gabriella Captur, Nicola Champion, Carmen Chan, David Collier, Jorge Couto Sousa, Xose Couto-Parada, Teresa Cutino-Moguel, Rhodri H. Davies, Brooke Douglas, Cecilia Di Genova, Keenan Dieobi-Anene, Anaya Ellis, Karen Feehan, Malcolm Finlay, Marianna Fontana, Nasim Forooghi, Celia Gaier, Derek Gilroy, Matt Hamblin, Gabrielle Harker, Jacqueline Hewson, Lauren M. Hickling, Aroon D. Hingorani, Lee Howes, Alun Hughes, Gemma Hughes, Rebecca Hughes, Ivie Itua, Victor Jardim, Wing-Yiu Jason Lee, Melanie Jensen, Jessica Jones, Meleri Jones, George Joy, Vikas Kapil, Hibba Kurdi, Jonathan Lambourne, Kai-Min Lin, Sarah Louth, Vineela Mandadapu, Áine McKnight, Katia Menacho, Celina Mfuko, Oliver Mitchelmore, Christopher Moon, Sam M. Murray, Mahdad Noursadeghi, Ashley Otter, Susana Palma, Ruth Parker, Kush Patel, Babita Pawarova, Steffen E. Petersen, Brian Piniera, Franziska P. Pieper, Daniel Pope, Mary Prossora, Lisa Rannigan, Alicja Rapala, Catherine J. Reynolds, Amy Richards, Matthew Robathan, Genine Sambile, Amanda Semper, Andreas Seraphim, Mihaela Simion, Angelique Smit, Michelle Sugimoto, Stephen Taylor, Nigel Temperton, Stephen Thomas, George D. Thornton, Art Tucker, Jessry Veerapen, Mohit Vijayakumar, Sophie Welch, Theresa Wodehouse, Lucinda Wynne, Dan Zahedi, Lucy van Dorp, Francois Balloux, Aine McKnight, Mahdad Noursadeghi, Antonio Bertoletti, Mala K. Maini
Nature Communications
Nicholas F. Brazeau, Cedar L. Mitchell, Andrew P. Morgan, Molly Deutsch-Feldman, Oliver John Watson, Kyaw L. Thwai, Pere Gelabert, Lucy van Dorp, Corinna Y. Keeler, Andreea Waltmann, Michael Emch, Valerie Gartner, Ben Redelings, Gregory A. Wray, Melchior K. Mwandagalirwa, Antoinette K. Tshefu, Joris L. Likwela, Jessie K. Edwards, Robert Verity, Jonathan B. Parr, Steven R. Meshnick, Jonathan J. Juliano
Genomic epidemiology of the first epidemic wave of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) in Palestine
Microbial Genomics
Nouar Qutob, Zaidoun Salah, Damien Richard, Hisham Darwish, Husam Sallam, Issa Shtayeh, Osama Najjar, Mahmoud Ruzayqat, Dana Najjar, Francois Balloux, Lucy van Dorp
Antibiotic treatment regimes as a driver of the global population dynamics of a major gonorrhea lineage
Molecular Biology and Evolution
Magnus N Osnes, Lucy van Dorp, Ola B Brynildsrud, Kristian Alfsnes, Thamarai Schneiders, Kate E Templeton, Koji Yahara, Francois Balloux, Dominique A Caugant, Vegard Eldholm
SARS-CoV-2 spike protein predicted to form complexes with host receptor protein orthologues from a broad range of mammals
Scientific Reports
Su. D. Lam, Nicola. Bordin, Vaishali. P. Waman, Harry. M. Scholes, Paul. Ashford, Neeladri. Sen, Lucy. van Dorp, Clemens. Rauer, Natalie. L. Dawson, Camilla S. M. Pang, Mahnaz. Abbasian, Ian. Sillitoe, Sarah. J. L. Edwards, Franca. Fraternali, Jonathan. G. Lees, Jo. M. Santini, Christine. A. Orengo
Population-level emergence of bedaquiline and clofazimine resistance-associated variants among patients with drug-resistant tuberculosis in southern Africa: a phenotypic and phylogenetic analysis
The Lancet Microbe
Camus Nimmo, James Millard, Lucy van Dorp, Kayleen Brien, Sashen Moodley, Allison Wolf, Alison D Grant, Nesri Padayatchi, Alexander S Pym, Francois Balloux, Max O'Donnell
The Lancet. Infectious diseases
Tehmina Bharucha, Clarissa Oeser, Francois Balloux, Julianne R Brown, Ellen C Carbo, Andre Charlett, Charles Y Chiu, Eric C J Claas, Marcus C Goffau, Jutte J C Vries, Marc Eloit, Susan Hopkins, Jim F Huggett, Duncan MacCannell, Sofia Morfopoulou, Avindra Nath, Denise M O'Sullivan, Lauren B Reoma, Liam P Shaw, Igor Sidorov, Patricia J Simner, Le Van Tan, Emma C Thomson, Lucy van Dorp, Michael R Wilson, Judith Breuer, Nigel Field
Infection, Genetics and Evolution
Lucy van Dorp, Mislav Acman, Damien Richard, Liam P. Shaw, Charlotte E. Ford, Louise Ormond, Christopher J. Owen, Juanita Pang, Cedric C.S. Tan, Florencia A.T. Boshier, Arturo Torres Ortiz, Francois Balloux
The European respiratory journal
Camus Nimmo, James Millard, Kayleen Brien, Sashen Moodley, Lucy van Dorp, Keeren Lutchminarain, Allison Wolf, Alison D Grant, Francois Balloux, Alexander S Pym, Nesri Padayatchi, Max O'Donnell
Infection, Genetics and Evolution
Antonio De-Dios, Lucy van Dorp, Philippe Charlier, Sofia Morfopoulou, Esther Lizano, Celine Bon, Corinne Le Bitouzé, Marina Alvarez-Estape, Tomas Marques-Bonet, Francois Balloux, Carles Lalueza-Fox
Discordant bioinformatic predictions of antimicrobial resistance from whole-genome sequencing data of bacterial isolates: an inter-laboratory study
Microbial Genomics
Ronan M. Doyle, Denise M. O'Sullivan, Sean D. Aller, Sebastian Bruchmann, Taane Clark, Andreu Coello Pelegrin, Martin Cormican, Ernest Diez Benavente, Matthew J. Ellington, Elaine McGrath, Yair Motro, Thi Phuong Thuy Nguyen, Jody Phelan, Liam P. Shaw, Richard A. Stabler, Alex Belkum, Lucy van Dorp, Neil Woodford, Jacob Moran-Gilad, Jim F. Huggett, Kathryn A. Harris
Molecular Biology and Evolution
Lucy van Dorp, Pere Gelabert, Adrien Rieux, Marc Manuel, Toni De-Dios, Shyam Gopalakrishnan, Christian Caroe, Marcela Sandoval-Velasco, Rosa Fregel, Inigo Olalde, Raul Escosa, Carles Aranda, Silvie Huijben, Ivo Mueller, Tomas Marques-Bonet, Francois Balloux, M Thomas P Gilbert, Carles Lalueza-Fox
mBio
Rhys A Farrer, Miwha Chang, Michael J Davis, Lucy van Dorp, Dong-Hoon Yang, Terrance Shea, Thomas R Sewell, Wieland Meyer, Francois Balloux, Hannah M Edwards, Duncan Chanda, Geoffrey Kwenda, Mathieu Vanhove, Yun C Chang, Christina A Cuomo, Matthew C Fisher, Kyung J Kwon-Chung
Nature Ecology and Evolution
Selina Brace, Yoan Diekmann, Tom J. Booth, Lucy van Dorp, Zuzana Faltyskova, Nadin Rohland, Swapan Mallick, Inigo Olalde, Matthew Ferry, Megan Michel, Jonas Oppenheimer, Nasreen Broomandkhoshbacht, Kristin Stewardson, Rui Martiniano, Susan Walsh, Manfred Kayser, Sophy Charlton, Garrett Hellenthal, Ian Armit, Rick Schulting, Oliver E. Craig, Alison Sheridan, Mike Parker Pearson, Chris Stringer, David Reich, Mark G. Thomas, Ian Barnes
Microbial Genomics
Lucy van Dorp, Qi Wang, Liam P. Shaw, Mislav Acman, Ola B. Brynildsrud, Vegard Eldholm, Ruobing Wang, Hua Gao, Yuyao Yin, Hongbin Chen, Chuling Ding, Rhys A. Farrer, Xavier Didelot, Francois Balloux, Hui Wang
Proceedings of the National Academy of Sciences of the United States of America
Lucy van Dorp, Sara Lowes, Jonathan L Weigel, Naser Ansari-Pour, Saioa Lopez, Javier Mendoza-Revilla, James A Robinson, Joseph Henrich, Mark G Thomas, Nathan Nunn, Garrett Hellenthal
Nature Communications
Ruobing Wang, Lucy van Dorp, Liam P. Shaw, Phelim Bradley, Qi Wang, Xiaojuan Wang, Longyang Jin, Qing Zhang, Yuqing Liu, Adrien Rieux, Thamarai Dorai-Schneiders, Lucy Anne Weinert, Zamin Iqbal, Xavier Didelot, Hui Wang, Francois Balloux
Population genomic analysis of elongated skulls reveals extensive female-biased immigration in Early Medieval Bavaria.
Proceedings of the National Academy of Sciences of the United States of America
Krishna R Veeramah, Andreas Rott, Melanie Gross, Lucy van Dorp, Saioa Lopez, Karola Kirsanow, Christian Sell, Jens Blocher, Daniel Wegmann, Vivian Link, Zuzana Hofmanova, Joris Peters, Bernd Trautmann, Anja Gairhos, Jochen Haberstroh, Bernd Paffgen, Garrett Hellenthal, Brigitte Haas-Gebhard, Michaela Harbeck, Joachim Burger
The Genetic Legacy of Zoroastrianism in Iran and India: Insights into Population Structure, Gene Flow, and Selection
American Journal of Human Genetics
Saioa. Lopez, Mark G. Thomas, Lucy van Dorp, Naser Ansari-Pour, Sarah Stewart, Abigail L. Jones, Erik Jelinek, Lounes Chikhi, Tudor Parfitt, Neil Bradman, Michael E. Weale, Garrett Hellenthal
Science
Farnaz Broushaki, Mark G Thomas, Vivian Link, Saioa Lopez, Lucy van Dorp, Karola Kirsanow, Zuzana Hofmanova, Yoan Diekmann, Lara M Cassidy, David Diez-Del-Molino, Athanasios Kousathanas, Christian Sell, Harry K Robson, Rui Martiniano, Jens Blocher, Amelie Scheu, Susanne Kreutzer, Ruth Bollongino, Dean Bobo, Hossein Davudi, Olivia Munoz, Mathias Currat, Kamyar Abdi, Fereidoun Biglari, Oliver E Craig, Daniel G Bradley, Stephen Shennan, Krishna Veeramah, Marjan Mashkour, Daniel Wegmann, Garrett Hellenthal, Joachim Burger
Proceedings of the National Academy of Sciences of the United States of America
Zuzana Hofmanova, Susanne Kreutzer, Garrett Hellenthal, Christian Sell, Yoan Diekmann, David Diez-Del-Molino, Lucy van Dorp, Saioa Lopez, Athanasios Kousathanas, Vivian Link, Karola Kirsanow, Lara M Cassidy, Rui Martiniano, Melanie Strobel, Amelie Scheu, Kostas Kotsakis, Paul Halstead, Sevi Triantaphyllou, Nina Kyparissi-Apostolika, Dushka Urem-Kotsou, Christina Ziota, Fotini Adaktylou, Shyamalika Gopalan, Dean M Bobo, Laura Winkelbach, Jens Blocher, Martina Unterlander, Christoph Leuenberger, Ciler Cilingiroğlu, Barbara Horejs, Fokke Gerritsen, Stephen J Shennan, Daniel G Bradley, Mathias Currat, Krishna R Veeramah, Daniel Wegmann, Mark G Thomas, Christina Papageorgopoulou, Joachim Burger
Evidence for a common origin of blacksmiths and cultivators in the Ethiopian Ari within the last 4500 Years: Lessons for clustering-based inference
PLoS Genetics
Lucy van Dorp, David Balding, Simon Myers, Luca Pagani, Chris Tyler-Smith, Endashaw Bekele, Ayele Tarekegn, Mark G. Thomas, Neil Bradman, Garrett Hellenthal