Reactions

A list of reactions from the model and their descriptions. Click on the name of a reaction to go to its rate

ADPtoATP	Phosphorylation of ADP by Complex V
	$ADP + P_{i} \to ATP$
ATPtoADP	Hydrolysis of ATP
	$ATP \to ADP + P_{i}$
O2_in	The reaction in which O $_{2}$ is supplied to the mitochondria
	$\to O_{2}$
PCrtoATP	A two way mass action reaction representing the interconversion of PCr + ADP to Cr + ATP.
	$PCr + ADP \leftrightarrow ATP + Cr$
PytoLac	interconversion between pyruvate and lactate
	$Py \leftrightarrow lac$
TCA	One step simple representation of pyruvate dehyrogenase and the TCA cycle
	$Py + 6 NAD \to$
a_ox	The reaction in which $a 3$ oxidises ${Cu}_{A}$ and $p_{2}$ protons are pumped out of the matrix
	$p 2 H_{m}^{+} \to 4 {Cu}_{A, o} + 4 a 3 r$
a_red	The reaction in which a is reduced and $p_{1}$ protons are pumped out of the matrix
	$4 {Cu}_{A, o} + p 1 H_{m}^{+} \to 2 NAD$
aden1	a two way reaction in which two molecules of ADP are converted into one of ATP and one of AMP.
	$2 ADP \leftrightarrow ATP + AMP$
b_ox	The reaction in which O $_{2}$ oxidises $a 3$ and $p_{2}$ protons are pumped out of the matrix
	$O_{2} + 4 a 3 r + p 3 H_{m}^{+} \to$
glucose_in	Transport of glucose from the blood to the cytoplasm (fixed rate)
	$\to gluc$
glucose_out	Transport of glucose from the cytoplasm to the blood
	$gluc \to$
glycol	a one way Michaelis Menten reaction which is assumed to capture the process of glycolysis
	$2 ADP + 2 P_{i} + gluc \to 2 ATP + 2 Py$
lactate_in	Transport of lactate from the blood to the cytoplasm (fixed rate)
	$\to lac$
lactate_out	Transport of lactate from the cytoplasm to the blood
	$lac \to$
psi_out	The reaction in which protons re-enter the matrix (via leak and complex V)
	$\to H_{m}^{+}$

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