Table S2.32. Fragment 32 interactions with Glu

Fragment 32
Listed below are the ligands in the PDB that contain the chemical fragment shown on the left and which interact via this fragment with the side chain of a Glu residue via hydrogen bonds.

The PDB codes are hyperlinked to a schematic LIGPLOT diagram in PDBsum.

Ligand Description


  1. Ligand: ISX
Glucose beta-1,3-isofagamine
PDB code: 2bvd.


  2. Ligand: NCW
(1s,2r,3s,4r,5r)-2,3,4-trihydroxy-n-octyl-6-oxa-8-azabicyclo[3.2.1]octane-8-carbothioamide
PDB code: 2vrj.


  3. Ligand: NOJ
1-deoxynojirimycin
PDB codes: 2j77, 2jke.


  4. Ligand: NOY
(2r,3s,4r,5r)-5-(hydroxymethyl)piperidine-2,3,4-triol
PDB codes: 2j75, 2vqu.


  5. Ligand: NOZ
(2s,3s,4r,5r)-5-(hydroxymethyl)piperidine-2,3,4-triol
PDB code: 2vl4.


  6. Ligand: 15A
(2z,3r,4s,5r,6r)-2-[(2-aminoethyl)imino]-6-(hydroxymethyl)piperidine-3,4,5-triol
PDB code: 2vqt.


  7. Ligand: 17B
(2z,3r,4s,5r,6r)-2-[(4-aminobutyl)imino]-6-(hydroxymethyl)piperidine-3,4,5-triol
PDB code: 2vr4.


  8. Ligand: G27
(3r,4r,5r)-5-(hydroxymethyl)-1-(3-phenylpropyl)piperidine-3,4-diol
PDB code: 2g9r.


  9. Ligand: IFG
(2r,3r,4s,5r)-2-acetamido-3,4-dihydroxy-5-hydroxymethyl-piperidine
PDB code: 1jak.


  10. Ligand: NBV
(2r,3r,4r,5s)-1-butyl-2-(hydroxymethyl)piperidine-3,4,5-triol
PDB code: 2v3d.


  11. Ligand: XDN
Piperidine-3,4,5-triol
PDB codes: 1fh7, 1v0k, 1v0m.