Table S1.112. Fragment 112 interactions with Asp |
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Listed below are the
ligands in the PDB that contain the chemical fragment shown on the
left and which interact via this fragment with the side chain of a
Asp residue via hydrogen bonds.
The PDB codes are hyperlinked to a schematic LIGPLOT diagram in PDBsum. |
Ligand | Description | |||||||||||||||||||||||
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1. Ligand: 5AD 5'-deoxyadenosine PDB code: 2cc2. |
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2. Ligand: 5AS 5'-o-(n-ethyl-sulfamoyl)adenosine PDB code: 1rzy. |
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3. Ligand: 5CD 5'-chloro-5'-deoxyadenosine PDB code: 2c2w. |
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4. Ligand: 5GP Guanosine-5'-monophosphate PDB codes: 1hgx, 1lvg, 1pzm, 1qk3, 2ble, 2fxv, 2jbh. |
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5. Ligand: A12 Phosphomethylphosphonic acid adenosyl ester PDB code: 1hpu. |
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6. Ligand: ABF Beta-d-arabinofuranose-5'-phosphate PDB code: 1o8b. |
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7. Ligand: AD3 3-deaza-adenosine PDB codes: 1hp0, 1kie, 2ziz. |
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8. Ligand: ADX Adenosine-5'-phosphosulfate PDB code: 2ofw. |
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9. Ligand: AIR 5-aminoimidazole ribonucleotide PDB codes: 2fwi, 2fwj. |
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10. Ligand: AMZ Aminoimidazole 4-carboxamide ribonucleotide PDB codes: 1m9n, 2cnq, 2cnq, 2uv5. |
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11. Ligand: AP2 Phosphomethylphosphonic acid adenosyl ester PDB code: 1av5. |
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12. Ligand: C2R 5-amino-1-(5-o-phosphono-beta-d-ribofuranosyl)-1h-imidazole-4-carboxylic acid PDB codes: 2gqs, 2nsl. |
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13. Ligand: CC5 Beta-d-erythrofuranosyl-adenosine PDB code: 2cbx. |
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14. Ligand: CDP Cytidine-5'-diphosphate PDB codes: 1gx1, 1iv2, 1orr, 2cmk. |
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15. Ligand: FBP Beta-fructose-1,6-diphosphate PDB codes: 1w8s, 2q8m, 3d1r. |
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16. Ligand: I2C 5'-o-[(s)-hydroxy{[2-hydroxy-3,5-dimethyl-6-(2-oxoethyl)pyridin-4-yl]oxy}phosphoryl]guanosine PDB codes: 3f46, 3f47. |
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17. Ligand: ICR (4r)-5-imino-1-(5-o-phosphono-beta-d-ribofuranosyl)-4,5-dihydro-1h-imidazole-4-carboxylic acid PDB code: 2fwp. |
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18. Ligand: MTA 5'-deoxy-5'-methylthioadenosine PDB code: 1eg2. |
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19. Ligand: MTP 2-hydroxymethyl-5-(6-methylsulfanyl-purin-9-yl)-tetrahydro-furan-3,4-diol PDB codes: 2aa0, 2ab8. |
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20. Ligand: MZP 4-carbamoyl-1-beta-d-ribofuranosyl-imidazolium-5-olate-5'-phosphate PDB code: 1pvn. |
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21. Ligand: NIA ((2r,3s,4r,5r)-5-(5-amino-4-nitro-1h-imidazol-1-yl)-3,4-dihydroxytetrahydrofuran-2- yl)methyl dihydrogen phosphate PDB codes: 2ate, 2nsh. |
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22. Ligand: NMN Beta-nicotinamide ribose monophosphate PDB codes: 1hyb, 1ta8, 2h3d, 2qg6, 2qsz, 3ba8, 3ba9, 3baa. |
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23. Ligand: NNR Nicotinamide riboside PDB codes: 2qt0, 2qt1. |
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24. Ligand: NOS Inosine PDB codes: 1kic, 2fqw. |
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25. Ligand: PAJ Pantoyl adenylate PDB codes: 1n2h, 1n2i. |
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26. Ligand: PRH 6-hydroxy-1,6-dihydro purine nucleoside PDB code: 1a4m. |
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27. Ligand: PRX Adenosine-5'-monophosphate-propyl ester PDB code: 1pg4. |
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28. Ligand: RVP Ribavirin monophosphate PDB code: 1me8. |
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29. Ligand: SFG Adenosyl-ornithine PDB codes: 1nw6, 2zbr, 3cjr. |
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30. Ligand: SLU 5'-o-[n-(dehydroluciferyl)-sulfamoyl] adenosine PDB codes: 2d1s, 2d1t. |
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31. Ligand: SR1 5-s-methyl-5-thio-alpha-d-ribofuranose PDB code: 2pyw. |
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32. Ligand: TIZ (1r)-1-[4-(aminocarbonyl)-1,3-thiazol-2-yl]-1,4-anhydro-d-ribitol PDB code: 2p0e. |
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33. Ligand: UDP Uridine-5'-diphosphate PDB codes: 1gy8, 1kvr, 1lzi, 1lzj, 1nah, 1nai, 1qgq, 1qgs, 1v83, 1v84, 1zi5, 1zj2, 2am5, 2b69, 2pzm, 2rj1, 2rj4, 2rj8, 2rj9, 3cu0. |
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34. Ligand: 13A 7-(3,4-dihydroxy-5r-hydroxymethyltetrahydrofuran-2-yl)-2,2-dioxo-1,2r,3r,7-tetrahydro-2l6- imidazo[4,5-c][1,2,6]thiadiazin-4s-one PDB code: 2b1g. |
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35. Ligand: 2FA 2-(6-amino-2-fluoro-purin-9-yl)-5-hydroxymethyl-tetrahydro-furan-3,4-diol PDB codes: 2pkk, 2zj0. |
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36. Ligand: 3DH 5'-s-ethyl-5'-thioadenosine PDB code: 3dhy. |
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37. Ligand: 3GP Guanosine-3'-monophosphate PDB code: 1rms. |
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38. Ligand: 52H 5'-o-{[(2r)-2-hydroxy-3,3-dimethylbutanoyl]sulfamoyl}adenosine PDB code: 3cow. |
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39. Ligand: 53H 5'-o-[(3-methyl-d-valyl)sulfamoyl]adenosine PDB code: 3coy. |
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40. Ligand: 54H 5'-o-(d-valylsulfamoyl)adenosine PDB code: 3coz. |
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41. Ligand: 5BU 5-bromo-uridine-5'-monophosphate PDB code: 2qcg. |
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42. Ligand: 5CA 5'-o-(n-(l-cysteinyl)-sulfamoyl)adenosine PDB code: 3c8z. |
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43. Ligand: 5FU 5-fluoro-uridine-5'-monophosphate PDB code: 2qcf. |
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44. Ligand: 5ID (2r,3r,4s,5r)-2-(4-amino-5-iodo-7h-pyrrolo[2,3-d]pyrimidin-7-yl)-5-(hydroxymethyl)tetrahydrofuran- 3,4-diol PDB code: 2vuw. |
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45. Ligand: 6AZ 6-azidouridine 5'-(dihydrogen phosphate) PDB code: 2zz6. |
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46. Ligand: 6CN 6-cyanouridine 5'-phosphate PDB codes: 2zz1, 2zz2, 2zz3, 2zz4, 2zz5. |
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47. Ligand: 7MG 7n-methyl-8-hydroguanosine-5'-monophosphate PDB code: 1h2t. |
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48. Ligand: 93A [3,4-dihydroxy-5r-(2,2,4-trioxo-1,2r,3s,4r-tetrahydro-2l6-imidazo[4,5-c][1,2,6]thiadiazin-7- yl)tetrahydrofuran-2-yl]methyl dihydrogen phosphate PDB code: 2b1i. |
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49. Ligand: A3P Adenosine-3'-5'-diphosphate PDB code: 1ka1. |
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50. Ligand: BMP 6-hydroxyuridine-5'-phosphate PDB codes: 1lor, 1x1z, 2zz1, 2zz7, 3bgg. |
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51. Ligand: C2G [Cytidine-5'-phosphate] glycerylphosphoric acid ester PDB code: 1n1d. |
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52. Ligand: CNU 5-cyano-uridine-5'-monophosphate PDB code: 3bk0. |
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53. Ligand: DTA (2s,3s,4r,5r,2's,3's,4'r,5'r)-2,2'-[dithiobis(methylene)]bis[5-(6-amino-9h-purin-9- yl)tetrahydrofuran-3,4-diol] PDB codes: 2i2c, 2q5f. |
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54. Ligand: FDP Fructose-2,6-diphosphate PDB codes: 1frp, 2qvu, 2qvv. |
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55. Ligand: FX3 5-o-[(2e)-3-(4-hydroxy-3-methoxyphenyl)prop-2-enoyl]-alpha-l-ribofuranose PDB code: 2vgd. |
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56. Ligand: GP2 Phosphomethylphosphonic acid guanosyl ester PDB code: 1s1d. |
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57. Ligand: H2U 5,6-dihydrouridine-5'-monophosphate PDB code: 2v0j. |
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58. Ligand: JW5 6-(hydroxymethyl)uridine 5'-(dihydrogen phosphate) PDB code: 2qcm. |
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59. Ligand: MOD L-methionyl adenylate PDB code: 1pg0. |
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60. Ligand: MSP 5'-o-[(l-methionyl)-sulphamoyl]adenosine PDB code: 1pfy. |
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61. Ligand: NUP 6-aminouridine 5'-monophosphate PDB code: 2q8z. |
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62. Ligand: OMP Orotidine-5'-monophosphate PDB codes: 1km6, 2prz, 2qcl. |
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63. Ligand: RPP 2-ribofuranosyl-3-iodo-2,3-dihydro-1h-pyrazolo[3,4-d]pyrimidin-4-ylamine PDB code: 1lij. |
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64. Ligand: SSS N-{[5-amino-1-(5-o-phosphono-beta-d-arabinofuranosyl)-1h-imidazol-4-yl]carbonyl}-l-aspartic acid PDB code: 2cnv. |
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65. Ligand: TSB 5'-o-(n-(l-threonyl)-sulfamoyl)adenosine PDB code: 1wk9. |
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66. Ligand: TYM Tryptophanyl-5'amp PDB codes: 1i6k, 1i6l, 1i6m, 1r6t, 1r6u. |
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67. Ligand: UDH 6-aminohexyl-uridine-c1,5'-diphosphate PDB codes: 2ae7, 2aec, 2aes, 2ah9, 3ee5. |
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68. Ligand: UP6 6-aza uridine 5'-monophosphate PDB codes: 1dvj, 1kly, 1km0, 1km1, 1km2, 1km3, 1km5, 1los, 2guu. |
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69. Ligand: UPP Phenyl-uridine-5'-diphosphate PDB code: 2udp. |
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