Members of the UGI have contributed towards the following
LDAK – improved SNP-based heritability analysis
Software for investigating the genetic architecture of complex traits and diseases.
Colocalisation of GWAS/eQTL signals to identify shared biological mechanisms
Compares association study p-values (e.g. from testing a biomarker), with liver or brain expression data outputting a posterior probability for a common signal within a region defined by the expression probe (200Kb upstream and downstream from the probe).
bnlearn - Bayesian network learning
An R package for learning the graphical structure of Bayesian networks, estimating their parameters and performing some useful inference
LikeLTD - Evaluation of mixed-source, low-template DNA profiels in forensic science
An R package for computing likelihoods for DNA profile evidence, including complex mixtures and when profiles are subject to dropout.
FastMixedModel - fast inference in linear mixed effects models
Incorporated within the MixABEL R package, within the GenABEL suite of software.
HyperLASSO - Simultaneious analysis of genome-wide SNP data
FREGENE - simulate sequence-like data in large genomic regions and large populations. Released as part of BARGEN (Bioinformatics for the Analysis and Exploitation of Resequenced Genomes).