UCL Bioimage Analysis Interest Group




Upcoming meetings
Charlie Barker (UCL Cancer Institute) - Phenotype specific networks from 'omics' data

Past meetings
24 Sept 2021 |
Dale Moulding (ICH Confocal Microscopy Facility) - Surface Peeler: High speed 3D surface extraction with Fiji
Hernando Martinez Vergara (Stephenson-Jones group, Sainsbury Wellcome Centre) - Whole-body integration of gene expression and single-cell morphology
29 October 2021 |
Elisabeth Kugler (MacDonald group - UCL Institute of Ophtalmology) - GliaMorph: A data analysis toolkit to quantify glia cell morphology
Benjamin Blundell (Ch’ng group - King’s College London) - 3D Structure from 2D Microscopy Images using Deep-Learning
26 November 2021 |
Claire Walsh (CABI / UCL Mechanical Engineering) - Interdisciplinary collaboration on big image data sets
Stefania Marcotti (King’s College, Stramer group) - A workflow for rapid unbiased quantification of fibrillar feature alignment in biological images
28 January 2022 |
Nathan Day (UCL Lowe/Charras groups) - How does cell competition play out on a single-cell level?
Rocco d’Antuono (Crick Advanced Light Microscopy STP) - ZELDA: A 3D Image Segmentation and Parent-Child Relation Plugin for Microscopy Image Analysis in napari
25 February 2022 |
Dan Tudosiu (King’s College - Cardoso group) - SynthAnato: Towards Morphologically Correct Synthetic Brain Images
Lucinda Evans (Royal Veterinary College - Pitsillides group) - Using high-resolution synchrotron imaging to resolve new detail and identify potential osteoarthritis biomarkers in mouse knee joints
29 April 2022 |
Hugh Ford (LMCB - Chubb group) - Using image analysis to extract the physics of cell aggregation and swarming
Jessica Forsyth (University of Manchester - Plusa & Cotter group) - IVEN: A quantitative tool to describe 3D cell position and neighbourhood
27 May 2022 |
Soham Mandal (EBI - Uhlmann group) - Splinedist: Automated Cell Segmentation With Spline Curves
Kasra Hosseini & Evangeline Corcoran (The Alan Turing Institute) - Automated plant phenotyping: plant patch classification with MapReader
16-17 June 2022 |
Special event - UCL Bioimage Analysis Group Collaborative Workshop
Full information and registration details here.
24 June 2022 |
Special event - joint meeting with UCL Bioimaging Interest Group
Paul Frankel, Isabelle Bond (UCL Institute of Cardiovascular Science) - The (virtual) reality of analysing zebrafish vasculature: Microscopy, registration, and quantification.
30 September 2022 |
David Barry (Crick Advanced Light Microscopy STP) – “How to be a Core Facility Image Analyst”
Pablo Vicente Munuera (LMCB, Mao group) – “Workshop on 3D segmentation: Cellpose + trackmate”
28 October 2022 |
Paddy Roddy (UCL ARC) – My Experiences with Neuroglancer - a 3D Web Based Viewer in the Cloud
Tchern Lenn (UCL Cancer Institute) – Why and how I used a UCL HPC cluster to analyse multi-colour 3D time-series
Namid Stillman (UCL CDB - Mayor lab) - Connecting the dots of cell migration: using generative models to couple biophysics to data
Wolfram Pönisch (Cambridge - Paluch lab) - How to quantify the stochastic dynamics of cell shape during cell state transitions
Megan Joseph (LCN, Simonelli Lab) - Quantitative Super Resolution Image Analysis
Aoife Hughes (The Alan Turing Institute) - Title TBC