Garrett Hellenthal Group
ChromoPainterv2: inferring haplotype sharing among individuals
Paper: Inference of Population Structure using Dense Haplotype Data
fineSTRUCTURE: clustering individuals based on haplotype sharing
Paper: Inference of Population Structure using Dense Haplotype Data
SOURCEFIND: inferring proportions of recent ancestry sharing among individuals/groups
GLOBETROTTER: identifying/dating/describing admixture events in a target population
Paper: A Genetic Atlas of Human Admixture History
Dave Curtis Group
Software and scripts to analyse relationship between genetic variants and complex disease phenotypes, especially utilising sequence data
- Recent software and scripts
- Older software
- Paper: Multiple linear regression allows weighted burden analysis of rare coding variants in an ethnically heterogeneous population
Richard Mott Group
Genotype Encryption
- Download Software
- Paper: Private Genomes and Public SNPs: Homomorphic Encryption of Genotypes and Phenotypes for Shared Quantitative Genetics
- Try to crack the encryption and win $1000
Imputation methods for low coverage sequencing
- Haplotype mosaic reconstruction for MAGIC populations
- See also STITCH (lead: Robert W Davies, Oxford)