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Group members and alumni

Group members and alumni of the Jasmin Fisher Lab, working on Computational Cancer Biology

Charlie Barker

Charlie Barker – Postdoctoral Research Associate
Email:  charles.barker.14@ucl.ac.uk

My research is based on developing a mechanistic understanding of the interaction between mutational and non-genetic contributors to Non-Small Cell Lung Cancer progression. To do this I use an array of computational and network-based tools to model complex biological data. The eventual goal of my research is to identify novel therapies that can be tailored to patients based on their mutational background and so improve overall responses to treatment.


Matthew Clarke - Jasmin Fisher Lab

Matthew Clarke – Postdoctoral Research Associate
Email: matthew.clarke@ucl.ac.uk
 
I am interested in computational modelling of gene regulatory networks in cancer, particularly in breast cancer and glioblastoma (GBM). My work focuses on the DNA damage response (DDR) pathway, how mutations cause it to malfunction leading to cancer and predicting treatment effects to find optimal and novel therapies. Beyond treatment response, I am investigating the potential of network models to predict the evolution of cancer and specifically whether we can use gene regulatory network models to predict the order of the acquisition of mutations during tumorigenesis, and the emergence of resistance after targeted therapy.

Tom Cox UCL Fisher Lab

Tom Cox – Postdoctoral Research Associate
Email: tom.cox@ucl.ac.uk

My research is focused on building a biological executable model of glioblastoma and high-grade glioma, these cancers are known for their aggression, poor prognosis, and a lack of widely available targeted therapies. I am interested in how the DNA damage responses and the driver mutations that differentiate glioblastoma subtypes contribute to tumour resistance or sensitivity to treatment. Therefore my goal is to produce a model able to predict individual patient responses to existing chemo-radiotherapy treatments based on their mutational background, as well as identifying optimal drug targets to increase their treatment response with targeted therapies.


Pedro Victori

Pedro Victori – Postdoctoral Research Associate
Email: pedro.victori@ucl.ac.uk

My work focuses on the use of computational modelling to tackle triple-negative breast cancer (TNBC), a disease characterised by its aggressiveness and low survival rate. TNBC is also remarkably heterogeneous, and I am interested in how this heterogeneity, along with tumour evolution and architecture confers the ability to resist therapy. Thus, I employ clinical data and executable models of biological networks to stratify tissue states and their potential for state transition and metastasis, which may serve to identify patients that will or will not respond to a given form of therapy. Moreover, in the case of non-responders, I analyse the mechanisms that underpin resistance to treatment, which can inform the development of new therapeutic strategies.


Helena Coggan

Helena Coggan – PhD studentEmail: helena.coggan.21@ucl.ac.uk

Co-supervised with Karen Page and Philip Pearce, Department of Mathematics, UCL

My work focuses on mathematical and computational modelling of clonal evolution in lung cancer. I am particularly interested in how the behaviour of tumour cells is affected by known oncogenic mutations, and in predicting the effects of inter-cellular interactions using evolutionary game theory.


Francesco Moscato

Francesco Moscato – PhD student
Email:  francesco.moscato.21@ucl.ac.uk

Co-supervised with Clare Bennett, UCL Cancer Institute

A multidisciplinary approach to boosting immune surveillance of primary melanoma in the skin.


Carla Castignani

Carla Castignani – PhD student
Email: carla.castignani@crick.ac.uk

Co-supervised with Charles Swanton & Peter Van Loo, Francis Crick Institute

My work focuses on the reconstruction of epigenomic evolutionary trajectories in lung cancer and to understand how these help drive carcinogenesis. Ultimately, and in collaboration with Jasmin Fisher’s group, I aim to build an integrated model of genomic, epigenomic and transcriptomic histories to obtain more robust evolutionary models.


Unami Hikwa

Unami Hikwa – iBSc student
Email: unami.hikwa.22@ucl.ac.uk

I am a third-year medical student currently completing an intercalated BSc in Computer Science and Medicine. My work focuses on epithelial-to-mesenchymal transition and its role in treatment resistance in triple-negative breast cancer. Through this research, I aim to better understand how these cellular transitions contribute to therapeutic challenges and potential targets for intervention in this aggressive cancer subtype.


Group alumni

Postdocs

  • Yuxin Sun (2020 – 2023)
  • Rowan Howell (2018-2022)
  • Steven Woodhouse (2016-2018)
  • Ben Hall (2012-2014)
  • Anthony Gitter (2012-2014)
  • Avital Sadot (joint with David Harel, 2007-2010)

PhD students

  • Daniel Jacobson (University College London 2020-2023, joint with Maria Secrier)
  • Matthew Clarke (University of Cambridge 2013-2017)
  • Steven Woodhouse (University of Cambridge 2013-2016, joint with Bertie Gottgens)
  • Antje Beyer (University of Cambridge 2009-2012)
  • Maria Mateescu (EPFL, joint with Tom Henzinger, 2006-2009)

MSc / MPhil students

  • Lydia Li (University College London 2024)
  • Marcin Burda (University College London, 2023)
  • Matt Handler (University College London, 2022)
  • Mengru Wang (University College London, 2021)
  • Ellen Jackson (University College London, 2021)
  • Sean Abbott-Imboden (University College London, 2020)
  • Klara Sinalova (University College London, 2020)
  • Tianyi Chen (University College London, 2020)
  • Simon Lam (University of Cambridge 2017, joint with Gerard Evan)
  • Emilie Feral (University of Cambridge 2016)
  • Moritz Reiterer (University of Cambridge 2016, joint with Gerard Evan)
  • Victoria Wang (University of Cambridge 2015, joint with Gerard Evan)
  • Peter Ackermann (University of Cambridge 2011, joint with Steve Oliver)
  • Ryan Chuang (University of Cambridge 2012, joint with Bertie Gottgens)
  • Lucinda Moore (University of Cambridge 2012, joint with Bertie Gottgens)
  • Antje Beyer (University of Cambridge 2008) 
  • Dennis Wang (University of Cambridge 2008)
  • Marc Schaub (EPFL 2005-2006)