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UCL Division of Biosciences

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Dr Mohsin Amir Faiz Khan

Mohsin Khan

I am a Bioinformatics Postdoctoral Research Associate in the UCL Research Department of Cell & Developmental Biology, working on an ERC-funded project to elucidate the molecular, genetic and embryological mechanisms responsible for twinning in higher vertebrates.

Telephone (Office): 020 3108 4045

Email: ucbtmaf@ucl.ac.uk

Profile

2000 Research Intern, Gerontology Research Centre, NIH
2002 BSc (Hons) Biology, DMU Leicester
2004 MSc Distributed Information Systems, Brunel University
2009 PhD Bioinformatics/Systems Biology, Brunel University
2010 Bioinformatics Postdoctoral Research Associate, UCL Research Department of Cell & Developmental Biology

 

Publications

  • 1). Khan, M. A., Soto-Jimenez, L. M., Howe, T., Streit, A., Sosinsky, A., & Stern, C. D. (2013). Computational tools and resources for prediction and analysis of gene regulatory regions in the chick genome. Genesis. doi:10.1002/dvg.22375
  • 2). Pinho, S., Simonsson, P.R., Trevers, K.E., Stower, M.J., Sherlock, W.T., Khan, M., Streit, A., Sheng, G. and Stern, C.D. (2011). Distinct Steps of Neural Induction Revealed by Asterix, Obelix and TrkC, Genes Induced by Different Signals from the Organizer. PLoS ONE. 6(4).
  • 3). Khan, M.,Gorle, CB., Fraser, K., Wang, P., Liu, X. and Li, SL. (2009). MicroPath - A pathway-based pipeline for the comparison of multiple gene expression profiles toidentify common biological signatures. J. Biomedical Science and Engineering 2, 106-116.
  • 4). Khan, M., Gorle, CB., Fraser, K., Wang, P., Liu, X. and Li, SL. (2009). BiSAn: A software for efficient computation of transcription factor binding motifs for high throughput gene expression analysis. IEEE 10.1109/ICBBE.2009.5162458
  • 5). Khalid, S., Khan, M.,Gorle, CB., Fraser, K., Wang, P., Liu, X. and Li, S. (2008). MaXlab: A novel application for the cross comparison and integration of biological signatures from microarray studies. In Silico Biology 8, 0029.
  • 6). Khalid, S., Khan, M., Symonds, A., Fraser, K., Wang, P., Liu, X. and Li, S. (2007). CIDA:An integrated software for the design, characterisation and global comparison of microarrays. Journal of Integrative Bioinformatics 4(3):78.
  • 7). Khalid, S., Fraser, K., Khan, M., Wang, P., Liu, X. and Li, S. Analysing Microarray Data using the Multi-Functional Immune Ontologiser. (2006). Journal of Integrative Bioinformatics 3(2).

Conferences

  • Khan, M., Gorle, CB., Fraser, K., Wang, P., Liu, X. and Li, SL. BiSAn: A software for efficient computation of transcription factor binding motifs for high throughput gene expression analysis. The 3rd International Conference on Bioinformatics and Biomedical Engineering, Beijing, China, June 2009
  • Khan, M., Khalid, S., Symonds, A., Gorle, CB., Fraser, K., Wang, P., Liu, X. and Li, SL. A systems biology approach for the global analysis of transcriptional networks in gene expression data. International Symposium on Integrative Bioinformatics, 5th annual meeting, Leucorea, Lutherstadt Wittenberg, Germany, August 2008
  • Khan, M., Khalid, S., Gorle, CB., Fraser, K., Wang, P., Liu, X. and Li, SL. MiNeR: A tool for the comparison of multiple gene expression studies to identify cellular transcriptional states. International Symposium on Integrative Bioinformatics, 5th annual meeting, Leucorea, Lutherstadt Wittenberg, Germany, August 2008
  • Khan, M., Khalid, S., Gorle, CB., Fraser, K., Wang, P., Liu, X. and Li, SL. Genome Interactions Analyser: a systems biology approach for the global analysis of transcriptional networks in microarray data. 3rd Annual Research Conference for Postgraduate Students, Brunel University, London, United Kingdom, 2007
  • Khalid, S., Khan, M., Wang, P., Liu, X. and Li, S. Application of Bioinformatics in the design of gene expression microarrays. IEEE proceedings, 163-177 (ISOLA Conference), Cyprus, November 2006

Prizes and Awards

  • Oral presentation, 1st prize. 3rd Annual Research Conference for Postgraduate Students, Brunel University, London, UK, 2007