Table S1.56. Fragment 56 interactions with Asp

Fragment 56
Listed below are the ligands in the PDB that contain the chemical fragment shown on the left and which interact via this fragment with the side chain of a Asp residue via hydrogen bonds.

The PDB codes are hyperlinked to a schematic LIGPLOT diagram in PDBsum.

Ligand Description


  1. Ligand: AB1
N-{1-benzyl-4-[2-(2,6-dimethyl-phenoxy)-acetylamino]-3-hydroxy-5-phenyl-pentyl}-3-methyl-2-(2-oxo-
tetrahydro-pyrimidin-1-yl)-butyramide
PDB codes: 2o4s, 2q5k, 2rkg.


  2. Ligand: DUC
Dihydropyrimidine-2,4(1h,3h)-dione
PDB code: 1uaq.


  3. Ligand: FOU
(5s,6r)-5-fluoro-6-hydroxydihydropyrimidine-2,4(1h,3h)-dione
PDB code: 2i82.


  4. Ligand: MU0
(5s)-n-[(1s,2s,4s)-1-benzyl-2-hydroxy-4-{[(2s)-3-methyl-2-(2-oxotetrahydropyrimidin-1(2h)-
yl)butanoyl]amino}-5-phenylpentyl]-2-oxo-3-phenyl-1,3-oxazolidine-5-carboxamide
PDB code: 2q55.