mallet publications

Four-taxon ABBA/BABA test of introgression. ABBA and BABA nucleotide sites employed in the test are derived (- - B -) in H. timareta compared with the silvaniform outgroup (- - - A), but differ among H. melpomene amaryllis and H. melpomene aglaope (either ABBA or BABA). As this almost exclusively restricts attention to sites polymorphic in the ancestor of H. timareta and H. melpomene, equal numbers of ABBA and BABA sites are expected under a null hypothesis of no introgression (Green et al. 2010 Science), as depicted in the two gene genealogies. From Fig. 3 of Heliconius Genome Consortium 2012

Selection against melanism in UK after the Clean Air Act. Survival of peppered moth morphs (+/- SE) over the course of six years of the predation experiment. Unfilled diamonds with dashed lines, non-melanic; filled squares with solid lines, melanic. From Fig. 1 of Laurence Cook et al. 2012

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Evidence for adaptive introgression at the B/D mimicry locus
a, Genetic divergence between H. melpomene races aglaope (rayed) and amaryllis (postman) across a hybrid zone in northeast Peru. Divergence, FST, measured along the B/D genomic region peaks in the locus that controls red wing pattern elements between the genes kinesin and optix. b, c, Distribution of fixed ABBA and BABA sites (see right) along B/D for two comparisons. Excesses of ABBA in b and BABA in c are highly significant, indicating introgression. From Fig. 4 of Heliconius Genome Consortium 2012

Journal articles


Martin SH, Dasmahapatra KK, Nadeau NJ, Salazar C, Walters JR, Simpson F, Blaxter M, Manica A, Mallet J, Jiggins CD. 2013. Genome-wide evidence for speciation with gene flow in Heliconius butterflies. Genome Research 23: 1817-1828. REPRINT Supplementary Info doi: 10.1101/gr.159426.113

Merrill RM, Naisbit RE, Mallet J, Jiggins CD. 2013. Ecological and genetic factors influencing the transition between host-use strategies in sympatric Heliconius butterflies. Journal of Evolutionary Biology 26: 1959-1967. REPRINT doi: 10.1111/jeb.12194

Briscoe AD, Macias-Muñoz A, Kozak KM, Walters JR, Yuan F, Jamie GA, Martin SH, Dasmahapatra KK, Ferguson LC, Mallet J, Jacquin-Joly E, Jiggins CD 2013. Female behaviour drives expression and evolution of gustatory receptors in butterflies. PLoS Genetics 9: e1003620. REPRINT (Open Access) doi:10.1371/journal.pgen.1003620

Mérot C, Mavárez J, Evin A, Dasmahapatra KK, Mallet J, Lamas G, Joron M. 2013. Genetic differentiation without mimicry shift in a pair of hybridizing Heliconius species (Lepidoptera: Nymphalidae). Biological Journal of the Linnean Society 109: 830-847. REPRINT DOI: 10.1111/bij.12091

eratosignis. 2013. Introgression: Brower's criticisms. Part I. New evidence for hybridization and introgression is unsettling. 7 January 2013. BLOG

eratosignis. 2013. Introgression: Brower's criticisms. Part II. Itemized critiques by Brower (2012), and comments thereon. 7 January 2013. BLOG

Rosser N, Phillimore AB & Mallet J. 2013. Extensive range overlap between Heliconius sister species: evidence for sympatric speciation in butterflies? Submitted. PREPRINT

Abbott R, Albach D, Ansell S, Arntzen JW, Baird SJE, Bierne N, Boughman J, Brelsford A, Buerkle CA, Buggs R, Butlin RK, Dieckmann U, Eroukhmanoff F, Grill A, Cahan SH, Hermansen JS, Hewitt G, Hudson AG, Jiggins C, Jones J, Keller B, Marczewski T, Mallet J, Martínez-Rodriguez P, Möst M, Mullen S, Nichols R, Nolte AW, Parisod C, Pfennig K, Rice AM, Ritchie MG, Seifert B, Smadja CM, Stelkens R, Szymura JM, Väinölä R, Wolf JBW, & Zinner D. 2013. Hybridization and speciation. Journal of Evolutionary Biology 26: 229-246. REPRINT DOI: 10.1111/j.1420-9101.2012.02599.x

Nadeau NJ, Martin SH, Kozak KM, Salazar C, Dasmahaptra KK, Davey JW, Baxter SW, Blaxter ML, Mallet J & Jiggins, C. 2013. Genome-wide patterns of divergence and gene flow across a butterfly radiation. Molecular Ecology 22: 814-826. REPRINT DOI: 10.1111/j.1365-294X.2012.05730.x



The Heliconius Genome Consortium. 2012. Butterfly genome reveals promiscuous exchange of mimicry adaptations among species. Nature (5 July 2012) 487: 94-98. REPRINT (Open Access) doi:10.1038/nature11041

Cook LM, Grant BS, Saccheri IJ & Mallet, J. 2012. Selective bird predation on the peppered moth: the last experiment of Michael Majerus. Biology Letters 8 (4): 609-612. REPRINT (Open Access) doi: 10.1098/rsbl.2011.1136

Rosser N, Phillimore AB, Huertas B, Willmott KR, & Mallet J. 2012. Testing historical explanations for gradients in species richness in heliconiine butterflies of tropical America. Biological Journal of the Linnean Society 105: 479-497. REPRINT DOI: 10.1111/j.1095-8312.2011.01814.x

Kronforst MR, Barsh GS, Kopp A, Mallet J, Monteiro A, Mullen SP, Protas M, Rosenblum EB, Schneider CJ, & Hoekstra HE. 2012. Unraveling the thread of nature's tapestry: the genetics of diversity and convergence in animal pigmentation. Pigment Cell and Melanoma Research 25: 411-433. REPRINT (Open Access) doi: 10.1111/j.1755-148X.2012.01014.x

Mallet J, & Dasmahapatra KK. 2012. Hybrid zones and the speciation continuum in Heliconius butterflies. Molecular Ecology 21:5643-5645. PREPRINT.

Merrill RM, Wallbank RWR, Bull V, Salazar PA, Mallet J, Stevens M & Jiggins, CD. 2012. Disruptive ecological selection on a mating cue. Proceedings of the Royal Society B: Biological Sciences 279: 4907-4913. REPRINT doi:10.1098/rspb.2012.1968

Mallet J. 2012. The struggle for existence. How the notion of carrying capacity, K, obscures the links between demography, Darwinian evolution and speciation. Evolutionary Ecology Research 14: 627–665. REPRINT. eReader/Kindle-friendly PREPRINT.

Hill RI, Elias M, Dasmahapatra KK, Jiggins CD, Koong V, Willmott KR & Mallet, J. 2012. Ecologically relevant cryptic species in the highly polymorphic Amazonian butterfly Mechanitis mazaeus sensu lato (Lepidoptera: Nymphalidae; Ithomiini). Biological Journal of the Linnean Society 106: 540-560.  REPRINT DOI: 10.1111/j.1095-8312.2012.01874.x

Boenigk J, Ereshefsky M, Hoef-Emden K, Mallet J, Bass D. 2012. Concepts in protistology: species definitions and boundaries. European Journal of Protistology 48: 96-102 and supplementary text.  REPRINT, Suppl. text 1 Mallet & Dasmahapatra, Suppl. text 2 Ereshefsky, Suppl. text 3 Hoef-Emden & Bass doi: 10.1016/j.ejop.2011.11.004

Nadeau NJ, Whibley A, Jones RT, Davey JW, Dasmahapatra KK, Baxter SW, Quail MA, Joron M, ffrench-Constant RH, Blaxter ML, Mallet J & Jiggins, CD. 2012. Genomic islands of divergence in hybridizing Heliconius butterflies identified by large-scale targeted sequencing. Philosophical Transactions of the Royal Society B 367: 343-353. REPRINT, Supplementary Info doi: 10.1098/rstb.2011.0198



Hines HM, Counterman BA, Papa R, Albuquerque de Moura P, Cardoso MZ, Linares M, Mallet J, Reed RD, Jiggins CD, Kronforst MR, McMillan WO. 2011. A wing patterning gene redefines the mimetic history of Heliconius butterflies. Proceedings of the National Academy of Sciences, USA 108: 19666-19671. REPRINT

de Silva DL, Silva Vásquez A, & Mallet J. 2011. Selection for enemy-free space: eggs placed away from the host plant increase survival of a Neotropical ithomiine butterfly. Ecological Entomology 36: 667-672. REPRINT

Mallet J, Wynne IR, Thomas CD. 2011. Hybridisation and climate change: brown argus butterflies in Britain (Polyommatus subgenus Aricia). Insect Conservation and Diversity 4: 192-199. REPRINT

Mallet J & Dasmahapatra K. (2011). Catfish mimics (News and Views on Alexandrou et al. article in same issue). Nature 469: 41-42. REPRINT



Baxter SW, Nadeau N, Maroja L, Wilkinson P, Counterman BA, Dawson A, Beltrán M, Perez-Espona S, Chamberlain N, Ferguson L, Clark R, Davidson C, Glithero R, Mallet J, McMillan WO, Kronforst M, Joron M, ffrench-Constant R & Jiggins CD. (2010). Genomic hotspots for adaptation: the population genetics of Müllerian mimicry in the Heliconius melpomene clade. PLoS Genetics 6(2): e1000794. LINK

Counterman BA, Araujo-Perez F, Hines HM, Baxter SW, Morrison CM, Lindstrom DP, Papa R, Ferguson L, Joron M, ffrench-Constant R, Smith CP, Nielsen DM, Chen R, Jiggins CD, Reed RD, Halder G, Mallet J & McMillan WO. 2010. Genomic hotspots for adaptation: the population genetics of Müllerian mimicry in Heliconius erato. PLoS Genetics 6(2): e1000796. LINK

Dasmahapatra KK, Lamas G, Simpson F, & Mallet J. 2010. The anatomy of a 'suture zone' in Amazonian butterflies: a coalescent-based test for vicariant geographic divergence and speciation. Molecular Ecology 19: 4283-4301.   REPRINT

Mallet J. 2010. Why was Darwin's view of species rejected by 20th Century biologists? Biology and Philosophy 25: 497-527.   REPRINT

Mallet J. 2010. Group selection and the development of the biological species concept. Philosophical Transactions of the Royal Society 365: 1853-1863.   REPRINT

de Silva DL, Day JJ, Elias M, Willmott K, Whinnett A & Mallet J. 2010. Molecular phylogenetics of the neotropical butterfly subtribe Oleriina (Nymphalidae: Danainae: Ithomiini). Molecular Phylogenetics and Evolution 55: 1032-1041.  REPRINT

Dasmahapatra KK, Elias M, Hill RI, Hoffman JI, & Mallet J. 2010. Mitochondrial DNA barcoding detects some species that are real, and some that are not. Molecular Ecology Resources 10 (2): 264-273.  REPRINT

Mallet J. 2010. Shift happens! Shifting balance and the evolution of diversity in warning colour and mimicry. Ecological Entomology 35 (Suppl. 1): 90-104.   REPRINT

Gourbière S & Mallet J. 2010. Are species real? The shape of the species boundary with exponential failure, reinforcement, and the 'missing snowball.'  Evolution 64: 1-24.  REPRINT



Mallet, J Meyer, A Nosil, P and Feder JL. 2009. Space, sympatry and speciation. Journal of Evolutionary Biology 22:2332-2341.   REPRINT

Sachs JD, Baillie JEM, Sutherland WJ, Armsworth PR, Ash N, Beddington J, Blackburn TM, Collen B, Gardiner B, Gaston KJ, Godfray HCJ, Green RE, Harvey PH, House B, Knapp S, Kümpel NF, Macdonald DW, Mace GM, Mallet J, Matthews A, May RM, Petchey O, Purvis A, Roe D, Safi K, Turner K, Walpole M, Watson R & Jones, KE. 2009. Policy forum: Biodiversity conservation and the Millennium Development Goals. Science 325: 1502-1503. LINK

Mallet J. 2009. Alfred Russel Wallace and the Darwinian species concept: his paper on the swallowtail butterflies (Papilionidae) of 1865. Gayana 73 (suppl. 1) 35-47.   REPRINT

Mallet J. 2009. Ask the ecologist: Are genetic barcodes the magic tools we need to achieve a precise estimation of biodiversity in tropical ecosystems? What are the advantages and problems associated with this methodological proposal? Ecology Briefs. Informative Bulletin of the Centro Internacional de Ecología Tropical (CIET), Caracas Vol. 1 (2): 3.  REPRINT



Mallet J. 2008.  Mayr's view of Darwin: was Darwin wrong about speciation?  Biological Journal of the Linnean Society 95: 3–16.  REPRINT

Mallet J. 2008. Hybridization, ecological races, and the nature of species: empirical evidence for the ease of speciation. Philosophical Transactions of the Royal Society B-Biological Sciences. 363: 2971–2986.   REPRINT



Mallet J, Beltrán M, Neukirchen W & Linares M. 2007.  Natural hybridization in heliconiine butterflies: the species boundary as a continuum.  BMC Evolutionary Biology 7:28 Heliconiine hybrid database

Mallet J. 2007.  Hybrid speciation.  Nature 446: 279-283. REPRINT

Anstead JA, Mallet J & Denholm I. 2007. Temporal and spatial incidence of alleles conferring knockdown resistance to pyrethroids in the peach-potato aphid, Myzus persicae (Hemiptera: Aphididae), and their association with other insecticide resistance mechanisms. Bulletin of Entomological Research 97: 243-252. 

Dasmahapatra KK, Silva A, Chung J-W & Mallet J. 2007. Genetic analysis of a wild-caught hybrid between non-sister Heliconius butterfly species. Biology Letters 3: 660-663. REPRINT

Elias M, Hill RI, Willmott K, Dasmahapatra K, Brower AVZ, Mallet J & Jiggins CD. 2007. Limited performance of DNA barcoding in a diverse community of tropical butterflies. Proceedings of the Royal Society B 274: 2881-2889. REPRINT

Beltrán M, Jiggins CD, Brower AVZ, Bermingham E & Mallet J. 2007. Do pollen feeding and pupal-mating have a single origin in Heliconius? Inferences from multilocus sequence data. Biological Journal of the Linnean Society 92: 221-239. REPRINT



Mallet J. 2006. What has Drosophila genetics revealed about speciation? Trends in Ecology and Evolution 21 (7): 186-193. REPRINT

Bull V, Beltrán M, Jiggins CD, McMillan WO, Bermingham E & Mallet J. (2006). Polyphyly and gene flow between non-sibling Heliconius species. BMC Biology 4:11

Joron M, Papa R, Beltrán M, Chamberlain N, Mavárez J, Baxter S, Abanto M, Bermingham E, Humphray SJ, Rogers J, Beasley H, Barlow K, ffrench-Constant RH, Mallet J, McMillan WO & Jiggins CD. 2006. A conserved supergene locus controls colour pattern diversity in Heliconius butterflies. PLoS Biology 4(10): e303. REPRINT

Dasmahapatra KK & Mallet J. 2006. DNA barcodes: recent successes and future prospects. Heredity 97: 254 - 255. REPRINT

International Commission for Zoological Nomenclature. 2006. Opinion 2152 (Case 3320). Papilio sapho, Drury, 1782 (Insecta, Lepidoptera): specific name conserved. Bulletin of Zoological Nomenclature 63: 144-145. REPRINT



Mallet J, Isaac NJB & Mace GM.  2005.  Taxonomic inflation and divergence between species.  Reply to Harris and Knapp.  Trends in Ecology and Evolution 20(1): 8-9.  REPRINT

Lamas G & Mallet JLB. 2005. Case 3320. Papilio sapho Drury, 1782 (currently Heliconius sapho; Insecta, Lepidoptera): proposed conservation of the specific name. Bulletin of Zoological Nomenclature 62(1): 21-24. REPRINT

Mallet J.  2005.  Hybridization as an invasion of the genome.  Trends in Ecology and Evolution 20 (5): 229-237.  REPRINT; Appendix 1; Appendix 2

Gourbiere S & Mallet J. 2005. Has adaptive dynamics contributed to the understanding of adaptive and sympatric speciation?  Journal of Evolutionary Biology 18:1201-1204.    REPRINT

Mallet J. 2005. Speciation in the 21st Century. Review of "Speciation", by Jerry A. Coyne & H. Allen Orr. Heredity 95: 105-109. REPRINT

Whinnett A, Brower AVZ, Lee M-M, Willmott KR & Mallet J. 2005. Phylogenetic utility of Tektin, a novel region for inferring systematic relationships amongst Lepidoptera. Annals of the Entomological Society of America 98: 873-886. REPRINT

Whinnett A, Willmott KR, Brower AVZ, Simpson F, Lamas G & Mallet J. 2005. Mitochondrial DNA provides an insight into the mechanisms driving diversification in the ithomiine butterfly Hyposcada anchiala (Lepidoptera: Nymphalidae, Ithomiinae). European Journal of Entomology 102: 633-639. REPRINT

Drès M & Mallet J. 2005. Molecular and behavioural evidence for gene flow between host races of the larch budmoth Zeiraphera diniana (Lepidoptera: Tortricidae). Proceedings of the Royal Society B, submitted. PREPRINT

Whinnett A, Zimmermann M, Willmott KR, Herrera N, Mallarino R, Simpson F, Joron M, Lamas G & Mallet J. 2005. Strikingly variable divergence times inferred across an Amazonian butterfly 'suture zone'. Proceedings of the Royal Society B 272: 2525-2533. REPRINT


Book chapters

Mallet J. 2013. Species, concepts of. In SA Levin, ed. Encyclopedia of Biodiversity. Volume 6. Waltham, Mass.: Academic Press, 679-691. REPRINT

Mallet J. 2013. Subspecies, semispecies, superspecies. In SA Levin, ed. Encyclopedia of Biodiversity. Volume 7. Waltham, Mass.: Academic Press, 45-48. REPRINT

Mallet J. 2013. Darwin and species. In M Ruse, ed. The Cambridge Encyclopedia of Darwin and Evolutionary Thought. Cambridge University Press. PREPRINT

Leimar O, Tullberg B, & Mallet J. 2012. Mimicry, saltational evolution and the crossing of fitness valleys. In EI Svensson & R Calsbeek, eds. The Adaptive Landscape in Evolutionary Biology. Oxford University Press, Oxford. pp. 259-270. REPRINT

Descimon H & Mallet J. 2009. Bad species. In J Settele, TG Shreeve, M Konvicka, and H Van Dyck, eds. Ecology of Butterflies in Europe. Cambridge University Press, Cambridge. pp. 219-249. PREPRINT (somewhat earlier version, but with plates and references), REPRINT (as published, but with no plates or references).

Mallet J. 2009. Introduction. In C-L Chan and GW Beccaloni, eds. Alfred Russel Wallace (1865). "On the Phenomena of Variation and Geographical Distribution as illustrated by the Papilionidae of the Malayan Region." Reprint edition. Natural History Publications (Borneo), Kota-Kinabalu, Malaysia. PREPRINT

Mallet J. 2009. Rapid speciation, hybridization and adaptive radiation in the Heliconius melpomene group. In R Butlin, J Bridle & D Schluter, eds.  Speciation and Patterns of Diversity. Cambridge University Press. pp. 177-194. REPRINT

Mallet J. 2008. Wallace and the species concept of the early Darwinians. In CR Smith & GW Beccaloni, eds.  Natural Selection and Beyond: The Intellectual Legacy of Alfred Russell Wallace. Oxford University Press. pp. 102-113. REPRINT

Mallet J. 2006. Species concepts. In: Evolutionary Genetics: Concepts and Case Studies In CW Fox and JB Wolf, eds. Oxford University Press, Oxford, pp. 367-373. REPRINT

Jiggins CD, Emelianov I & Mallet J. 2005. Pleiotropy promotes speciation: examples from phytophagous moths and mimetic butterflies. In M Fellowes, G Holloway & J Rolff, eds. Insect Evolutionary Ecology. CABI Publishing, Wallingford, Oxon., pp. 455-478. REPRINT (with incorrect pagination)

Mallet J. (2001).  Gene flow.  In: IP Woiwod, DR Reynolds, & CD Thomas, eds. Insect Movement: Mechanisms and Consequences. CAB International, Wallingford, UK. pp. 337-360. REPRINT     [read only REPRINT]

Older publications
Last updated: 2 Dec 2013