Jonathan Chubb Research Group

1995, BA, Cambridge University
2000, PhD, University College London
Jonathan Chubb
Tel: +44 (0)207 679 7271
Wellcome Trust Senior Fellowship
BBSRC Project Grant 2014-2017
Previous Posts: 
2000-03: Post-doctoral fellow, MRC Human Genetics Unit, Edinburgh
2003-05: Post-doctoral fellow, Albert-Einstein College of Medicine, New York
2005-11: Principal Investigator, College of Life Sciences, University of Dundee

Gene expression dynamics

Despite the generation of transcriptional differences between nearby related cells being the basis of most differentiation and disease, our standard measures of RNA synthesis do not register the origins of these differences. Although useful for a preliminary rough sorting of genes to context, the widespread techniques of Northern blotting, microarrays, RT-PCR and RNA-Seq measure bulk RNA levels from homogenous population extracts. These approaches lose dynamic information from individual cells, and give the impression transcription is a continuous smooth process. The reality is that transcription is irregular, with strong variable duration periods of activity, interspersed by variable duration periods of inactivity (see movie sequences). Averaged over millions of cells, this appears continuous. But at the individual cell level, there is considerable variability, and for most genes, very little activity at any one time.  Transcription of genes, the process which transforms the stable code written in DNA into the mobile RNA message can occur in "bursts" or"pulses" (see movie sequence). These phenomena have recently come to light with the advent of new technologies, to detect RNA in single cells, allowing precise measurements of RNA number, or RNA emergence at a gene.  We would like to understand the mechanistic basis of pulsing, and how it is responsive to signals, developmental and chromatin context. And we are testing the implications of noisy transcription on the generation of diversity between cells in developmental and clinical contexts.


Lab Members: 
Rotation Student
Sarah Aldous
Vlatka Antolovic
Adam Corrigan
Rotation student
Julia Deathridge
HFSP fellow
Agnès Miermont
John Nichols
BBSRC Systems Biology PhD student
Edward Tunnacliffe

Tetsuya Muramoto (former post-doc) now Assistant Professor at Toho University in Japan.

Michelle Stevense (former PhD student).Michelle now has her own post-doc fellowship to work on the molecular regulation of mammalian meiosis, in Dresden.

Iris Mueller (former post-doc). Now at the Federal Institute of Risk Assessment in Berlin, defining the epigenetic changes caused by pharmaceutical drugs and xenobiotic compounds.

Danielle Cannon (former post-doc) now Science Portfolio Advisor with the Wellcome Trust in London.

Patrick McDonel (former post-doc) now senior scientist in the Lander lab at the Broad Institute, Boston


Number of publications: 26.