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UCL Great Ormond Street Institute of Child Health

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Bioinformatics

Analysis of RNAseq data 

We use a custom analysis pipeline to detect differentially regulated genes between groups (triplicates required). 


Customised Analysis for microarrays and RNAseq

Customised Analysis for microarrays and RNAseq

  • Affymetrix Gene and Exon Microarray analysis
  • Commercial software such as GeneSpring and Strand NGS (Agilent), Ingenuity Pathway Analysis (Qiagen), Expression Console (Affymetrix)
  • Linkage & Homozygosity mapping

Variant analysis

Please contact us for access to Ingenuity Variant Analysis (Qiagen) to help quickly identify casual variants from  exome sequencing data (UCL only).  Please contact Mike Hubank for costs and access codes.


Further analysis

For further analysis please contact the UCL Genetics Institute (UGI) for:

  • Exome sequencing
  • Genomic re-sequencing & assembly
  • ChIP-seq peak finding & annotation
  • RNA-seq and expression analysis