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GIATE Publications

Journal Papers

• Alejandra González-Beltrán, May Yee Yong, Gairin Dancey, Richard Begent Guidelines for Information About Therapy Experiments: a proposal on best practice for recording experimental data on cancer therapy BMC Research Notes, 2012                   pubmed: http://www.ncbi.nlm.nih.gov/pubmed/22226027
• May Yee Yong, Alejandra González-Beltrán, Richard Begent Establishing a knowledge trail from molecular experiments to clinical trials New Biotechnology, 2011.
  pubmed: http://www.ncbi.nlm.nih.gov/pubmed/21473938

• Carsten Kettner, Dawn Field, Susanna Sansone, Chris Taylor, Jan Aerts, Nigel Binns, Andrew Black, Cedrik M. Britten, Ario de Marco, Jennifer Fostel, Pascale Gaudet, Alejandra González-Beltrán, Nigel Hardy, Jan Hellmans, Hennin Hermjakob, Nick Juty, Jim Leebens-Mack, Eamonn Maguire, Steffen Neumann, Sandra Orchard, Helen Parkinson, William Piel, Shoba Ranganathan, Philippe Rocca-Serra, Annapaola Santarsiero, David Shotton, Peter Sterk, Andreas Untergasser, Patricia L. Whetzel
  Meeting Report from the Second “Minimum Information for Biological and Biomedical Investigations” (MIBBI) workshop
  Standards in Genomic Sciences, Vol 3, No 3 (2010)
  doi:10.4056/sigs.1473621
  html: http://sigen.org/index.php/sigen/article/view/sigs.1473621/437
  pdf: http://www.sigen.org/index.php/sigen/article/view/sigs.1473621/sigs.1473621
  

• M. Yong, R. Begent. "Best use of experimental data in cancer informatics".
  

  Future Oncology. October 2010, Vol. 6, No. 10, Pages 1551-1562
  doi: 10.2217/fon.10.108
  pubmed: http://www.ncbi.nlm.nih.gov/pubmed/21062155
  

• M. Yong, B. Tolner, S. Nagl, R.B. Pedly, K. Chester, A.J. Green, A. Mayer, S. Sharma, R. Begent. "Data standards for minimum information collection for antibody therapy experiments". Protein, Engineering, Design and Selection.  (2009) 22 (3): 221-224. Antibody Special Issue
  doi: 10.1093/protein/gzp003
  pubmed: http://www.ncbi.nlm.nih.gov/pubmed/19224941

Posters

• May Yong, Alejandra Gonzalez-Beltran, Richard Begent. "A data framework for facilitating data integration and boosting translational research - Therapy data, medical images, and computational algorithms". Computational Life and Medical Sciences (CLMS) Network, Second Annual Symposium, June 28th, 2012. University College London.  poster: CLMS-2012.pdf
• May Yong, Alejandra Gonzalez-Beltran, Richard Begent. "Integrating Comprehensive Cancer Imaging Centre's data: Semantic linkage of images and experimental data to aid translational research". The 3rd Annual Cancer Research UK & EPSRC Cancer Imaging Conference. Imperial College London, April 26th, 2012. poster: CRUK-EPSRC-ImagingConference-2012.pdf
• Alejandra Gonzalez-Beltran, May Yong, Richard Begent. "Towards an unambiguous and formal description of cancer therapy experiments". In “Building a Collaborative Biomedical Network“, caBIG Annual Meeting, September 13-15, 2010, Washington, D.C., U.S.A. poster: AGB-caBIG2010-GIATE.pdf abstract: AGB-caBIG2010-GIATE-abstract.pdf
• May Yong, Richard Begent. "Structure through reporting guidelines: information-focused approach to scientific publishing". In 2010 NCI-NCRI Informatics Initiative Joint Conference "Biomedical Informatics withouth borders: Implementing Interoperability", June 21-22, 2010, Bethesda, M.D., U.S.A.