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CoMPLEX Publications

In this section you can find the publications of current CoMPLEX students by intake year.


2005 intake

Nuno Rocha Nene

Nene, N.R.,Zaikin, A. Decision making in noisy bistable systems with time-dependent asymmetry. (PRE, in press)

Nene, N. R., Zaikin, A. (2012) Interplay between path and speed in decision making by high-dimensional stochastic gene regulatory networks. PLoS ONE 7(7): e40085.

E. Ullner, S. Ares, L.G. Morelli, A.C. Oates, F. Julicher, E. Nicola , R. Heussen, D. Whitmore, K. Blyuss, M. Fryett, A. Zakharova, A. Koseska, N.R. Nene, and A. Zaikin. (2012) Noise and oscillations in biological systems: multidisciplinary approach between experimental biology, theoretical modelling and synthetic biology. Int. J. Mod. Phys. B 26, 1246009 (2012).

Nene, N.R., Garca-Ojalvo, J., Zaikin, A. (2012) Speed-Dependent Cellular Decision         Making in Nonequilibrium Genetic Circuits. PLoS ONE 7(3): e32779.

N.R. Nene, A. Zaikin. Gene regulatory network attractor selection and cell fate decision: insights into cancer multi-targeting. Proceedings of the BIOSIGNAL 2010 conference. 14th – 16th July 2010 Berlin, Germany.

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2006 intake

Matthew Caldwell Nanoscale live-cell imaging using hopping probe ion conductance microscopy Novak et al, Nature Methods 2009, Apr; 6(4):279-81
Yoana Dimitrova Dimitrova YD, McOwan P, Johnston A, 2010, Lightness estimation errors in a 3D context. J Vis August 2, 2010 10(7): 453; doi:10.1167/10.7.453.

Gleeson P, Crook S, Cannon RC, Hines ML, Billings GO, Farinella M, Morse TM, Davison AP, Ray S, Bhalla US, Barnes SR, Dimitrova YD, R. Angus Silver A, 2010, “NeuroML: A Language for Describing Data Driven Models of Neurons and Networks with a High Degree of Biological Detail”, PLoS Comput Biol 6(6): e1000815.
Ben Hall Ben Hall, Alan Johnston and John Shawe-Taylor, NIPS Workshop Paper, 2007, kCCA Audio Visual Speech Recognition.
Ed Long E. Long, B. Henderson and A. Zaikin. In silico analysis of microdomain-mediated trimer formation in the T cell membrane. From the issue entitled "The Dynamics of Nonlinear Stochastic Systems”
James Muir Muir J, Arancibia-Carcamo IL, MacAskill AF, Smith KR, Griffin LD, Kittler JT.NMDA receptors regulate GABAA receptor lateral mobility and clustering at inhibitory synapses through serine 327 on the γ2 subunit. Proc Natl Acad Sci U S A. 2010 Sep 21;107(38):16679-84. Epub 2010 Sep 7.

Arancibia-Cárcamo IL, Yuen EY, Muir J, Lumb MJ, Michels G, Saliba RS, Smart TG, Yan Z, Kittler JT, Moss SJ.Ubiquitin-dependent lysosomal targeting of GABA(A) receptors regulates neuronal inhibition. Proc Natl Acad Sci U S A. 2009 Oct 13;106(41):17552-7. Epub 2009 Oct 6.

Macaskill AF, Rinholm JE, Twelvetrees AE, Arancibia-Carcamo IL, Muir J, Fransson A, Aspenstrom P, Attwell D, Kittler JT. Miro1 is a calcium sensor for glutamate receptor-dependent localization of mitochondria at synapses. Neuron. 2009 Feb 26;61(4):541-55.
Andy Newell A.J. Newell, L. D. Griffin, R. M. Morgan, and P. A. Bull, “Texture-based estimation of physical characteristics of sand grains,” in Proceedings of the International Conference on Digital Image Computing: Techniques and Applications Sydney, pp. 504–509, 2010.

Newell, A. J., Morgan, R. M., Griffin, L. D., Bull, P. A., Marshall, J.R. and Graham, G. Automated texture recognition of quartz sand grains for forensic applications Journal of Forensic Sciences
Sam Tazzyman S.J. Tazzyman, T. Pizzari, R.M. Seymour and A. Pomiankowski, "The Evolution of Continuous Variation in Ejaculate Expenditure Strategy"; American Naturalist 174(2009), E71-E82.

S.J. Tazzyman and Y. Iwasa, "Sexual selection can increase the effect of random genetic drift - a quantitative genetic model of polymorphism in Oophaga pumilio, the strawberry poison-dart frog"; Evolution 64(2010), 1719-1728

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2007 intake

Maqsood Ahmed M. Ahmed, G. Hamilton and A. Seifalian “Viscoelastic behaviour of a small calibre vascular graft made from a POSS-nanocomposite” Conf Proc IEEE Eng Med Biol Soc, 2010, pp 251-254.

M. Desai, M. Ahmed, Z. You, G. Hamilton, A. Seifalian, “An aortic model for the physiological assessment of endovascular stent-grafts”, Annals of Vascular Surgery, in press. Paper: M. Ahmed, L. Yildrimer, A. Khademhosseini, A. Seifalian., Nanostructured Materials for Cardiovascular Tissue Engineering., Journal of Nanoscience and Nanotechnology, accepted for publication – in press.

M. Ahmed and A. Seifalian, “Organs from Nanomaterials” in Handbook of Nanophysics: Nanomedicine and Nanorobotics, CRC Press, 2010, Chapter 19
Arturo Araujo Araujo, A., Bentley, P. J. and Baum, B. (2010) Modelling the Role of Aneuploidy in Tumour Evolution. In Proc of 12th International Conference on the Synthesis and Simulation of Living Systems. Odense, Denmark, 19-23 August 2010. MIT Press.

Araujo, A., Bentley, P. J. and Baum, B. (2010) Modelling the Role of Chromosome Missegregation in Cancer Therapies. Extended Abstract in 3rd Complex Systems Modelling and Simulation Workshop, 12th International Conference on the Synthesis and Simulation of Living Systems.
Gwenan Knight Seymour RM, Knight G, Fung T. Bull Math Biol. 2010 Nov;72(8):1971-2003. Epub 2010 Mar 3. Conditions for global dynamic stability of a class of resource-bounded model ecosystems.
Kevin Lau Lau, K. D.; Diaz, V.; Scambler, P. & Burriesci, G. Mitral valve dynamics in structural and fluid-structure interaction models. Med Eng Phys, 2010, 32, 1057-1064
Lorette Noiret Wright, G., Noiret, L., Olde Damink, S. W. M. and Jalan, R. (2011), Interorgan ammonia metabolism in liver failure: the basis of current and future therapies. Liver International, 31: 163–175. doi: 10.1111/j.1478-3231.2010.02302.x
Johannes Riegler J. Riegler, J. A. Wells, P. G. Kyrtatos, A. N. Price, Q. A. Pankhurst and M. F. Lythgoe, "Targeted magnetic delivery and tracking of cells using a magnetic resonance imaging system," Biomaterials 31, 5366-5371 (2010).

J. Riegler, B. Allain, R. J. Cook, M. F. Lythgoe and Q. A. Pankhurst, "Magnetically assisted delivery of cells using a magnetic resonance imaging system," Journal of Physics D: Applied Physics 44, 055001-055011 (2011).

J. Riegler, K. K. Cheung, Y. F. Man, J. O. Cleary, A. N. Price and M. F. Lythgoe, "Comparison of segmentation methods for MRI measurement of cardiac function in rats," Journal of Magnetic Resonance Imaging 32, 869-877 (2010). S. Bollini, M. Pozzobon, M. Nobles,

J. Riegler, X. Dong, M. Piccoli, A. Chiavegato, A. Price, M. Ghionzoli, K. Cheung, A. Cabrelle, P. O. Mahoney, E. Cozzi, S. Sartore, A. Tinker, M. Lythgoe and P. De Coppi, "In Vitro and In Vivo Cardiomyogenic Differentiation of Amniotic Fluid Stem Cells," Stem Cell Reviews and Reports 1-17 (2010).

A. N. Price, K. K. Cheung, J. O. Cleary, A. E. Campbell, J. Riegler and M. F. Lythgoe, "Cardiovascular Magnetic Resonance Imaging in Experimental Models," The Open Cardiovascular Medicine Journal 278-292 (2010).

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2008 intake

Tom Blacker Nicolaou, N., Marsh, R. J., Blacker, T., Armoogum, D. A., Bain, A. J.; Time-resolved fluorescence and FCS studies of dye-doped DNA, Nanophotonic Materials VI, SPIE 7393, 2009.
Jack Honeysett Honeysett J. E., Stride E. & Leung T. Feasibility study of non-invasive oxygenation measurement in a deep blood vessel using acousto-optics and microbubbles. Advances in Experimental Medicine and Biology (in press).

Honeysett J., Stride E. & Leung T. Monte Carlo simulations of acousto-optics with microbubbles. Proceedings of SPIE 7564, 75640K(2010)
Tracy Moroz Tracy Moroz, Murad Banaji, Martin Tisdall, Chirs E. Cooper, Clare E. Elwell, and Ilias Tachtsidis. Development of a model to aid NIRS data interpretation: Results from a hypercapnia study in healthy adults. Advances in Experimental Medicine and Biology series. (accepted for publication January 2011)
Fran Norris Cleary JO, Wiseman FK, Norris FC, Price AN, Choy M, Tybulewicz VL, Ordidge RJ, Brandner S, Fisher EM, Lythgoe MF. Structural correlates of active-staining following magnetic resonance microscopy in the mouse brain. 2011 Jun 1;56(3):974-83. Epub 2011 Feb 16.

Cleary JO, Modat M, Norris FC, Price AN, Jayakody SA, Martinez-Barbera JP, Greene ND, Hawkes DJ, Ordidge RJ, Scambler PJ, Ourselin S, Lythgoe MF. Magnetic resonance virtual histology for embryos: 3D atlases for automated high-throughput phenotyping. 2011 Jan 15;54(2):769-78. Epub 2010 Jul 23.

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2009 intake

Joe
Bailey
 Leung G, Knott P, Bailey J, Kendon V. Coined quantum walks on percolation graphs. New Journal of Physics. 2010;12(12):123018. December 20, 2010.
Nicolas
Jaccard
 Nicolas Szita, Karen Polizzi, Nicolas Jaccard and Frank Baganz. Microfluidic approaches for systems and synthetic biology. Current Opinion in Biotechnology, Volume 21, Issue 4, August 2010, Pages 517-523



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